PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06287.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 183aa    MW: 21111.2 Da    PI: 10.1581
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06287.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5381411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdeel+ +yL+k++++++l++ ++i+evdiyk++Pw+Lp k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+     
  PK06287.2   8 LPPGFRFHPTDEELILHYLRKRINSTPLPV-SIIAEVDIYKFDPWQLPDKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIISSslcss 106
                79****************************.89***************8777899***************************************989888 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++g+kk Lvfykgr pkg+kt+W+mheyrl
  PK06287.2 107 ssYHQNIGVKKALVFYKGRPPKGVKTNWIMHEYRL 141
                776677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-615151IPR003441NAC domain
PROSITE profilePS5100555.6428162IPR003441NAC domain
PfamPF023654.6E-289141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKNPQSNLPP GFRFHPTDEE LILHYLRKRI NSTPLPVSII AEVDIYKFDP WQLPDKALFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIIS SSLCSSSSYH QNIGVKKALV  120
FYKGRPPKGV KTNWIMHEYR LAESPTYAYN SKLNNINKVK DSSMRVSDTC QLKIGFLLVY  180
VNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-66515514156NO APICAL MERISTEM PROTEIN
1ut4_B4e-66515514156NO APICAL MERISTEM PROTEIN
1ut7_A4e-66515514156NO APICAL MERISTEM PROTEIN
1ut7_B4e-66515514156NO APICAL MERISTEM PROTEIN
3swm_A4e-66515517159NAC domain-containing protein 19
3swm_B4e-66515517159NAC domain-containing protein 19
3swm_C4e-66515517159NAC domain-containing protein 19
3swm_D4e-66515517159NAC domain-containing protein 19
3swp_A4e-66515517159NAC domain-containing protein 19
3swp_B4e-66515517159NAC domain-containing protein 19
3swp_C4e-66515517159NAC domain-containing protein 19
3swp_D4e-66515517159NAC domain-containing protein 19
4dul_A4e-66515514156NAC domain-containing protein 19
4dul_B4e-66515514156NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088481.14e-96NAC domain-containing protein 29
SwissprotA2YMR01e-76NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8H4S42e-76NAC10_ORYSJ; NAC transcription factor ONAC010
TrEMBLW9QFW15e-96W9QFW1_9R
STRINGPOPTR_0019s04690.15e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-82NAC domain containing protein 47